Eggplant Genome
Further investigations have revealed the relationships between wild species domesticated eggplant and feral weedy eggplant derived from the domesticate as well as targets of selection during domestication. Here we report a high-quality chromosome-scale eggplant reference genome sequence of 11558 Mb with N50 of 939 Mb which.
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2014 DNA Research in press.
Eggplant genome. The Solanaceae family comprises around 2700 plant species adapted to vastly. Further investigations have revealed the relationships between wild species domesticated eggplant and feral weedy eggplant derived from the domesticate as well. Melongena cultivars from its wild.
The final eggplant pseudomolecules span 12Gb of the eggplant genome with a N50 value of 322Mb. 74 of the eggplant genome. The eggplant genome was first sequenced in 2014 and an improved version was due to be released in 2017.
With approximately 450 species spiny Solanum species constitute the largest monophyletic group in the. The eggplant genome was first sequenced in 2014 and an improved version was due to be released in 2017. A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution Abstract.
Here we report a high-quality chromosome-scale eggplant reference genome sequence of 11558 Mb with N50 of 939 Mb which was assembled by combining PacBio long reads and Hi-C sequencing data. Hirakawa H Shirasawa K Miyatake K Nunome T Negoro S Ohyama A Yamaguchi H Sato S Isobe S Tabata S Fukuoka H. The eggplant Solanum melongena L is one of the most important Solanaceae crops ranking third in the total production and economic value in the genus Solanum.
The genome size of the eggplant inbred line HQ-1315 is 120525Mb with a heterozygosity rate of 015 as assessed by k-mer analysis based on 9333Gb Illumina HiSeq data. Keyword Search BLAST search result against NCBIs NR database. Draft Genome Sequence of Eggplant Solanum melongena L.
We identified 53 selective sweeps related to fruit color prickliness and fruit shape in the nuclear genome highlighting selection leading to the emergence of present-day S. Repetitive sequences occupied 701 of the assembly length and 35018 high-confidence protein-coding genes were annotated based on multiple evidence. The eggplant pan-genome contained approximately 515 additional megabases and 816 additional genes compared with the reference genome while the pan-plastome showed little genetic variation.
Eggplant Genome Database at Kazusa DNA Research Institute. The Representative Solanum Species Indigenous to the Old World. The newly developed eggplant genome sequence represents an improvement in respect to the previous one published in 2104 by Hirakawa and co-authors both in terms of projected genome size and lower number of larger scaffolds N50 of 20 Mb in respect to 645 Kb.
The eggplant pan-genome contained approximately 515 additional megabases and 816 additional genes compared with the reference genome while the pan-plastome showed little genetic variation. To broaden our knowledge of the genomic nature of solanaceous plants further we dissected the eggplant genome and built a draft genome dataset with 33873 scaffolds termed SME_r251 that covers 8331 Mb ca.
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